Learning Objectives
- Create a directory hierarchy that matches a given diagram.
- Create files in that hierarchy using an editor or by copying and renaming existing files.
- Display the contents of a directory using the command line.
- Delete specified files and/or directories.
We now know how to explore files and directories, but how do we create them in the first place? Let's go back to Nelle's home directory, /users/nelle, and use ls -F to see what it contains:
$ pwd
/users/nelle
$ ls -F
creatures/ molecules/ pizza.cfg
data/ north-pacific-gyre/ solar.pdf
Desktop/ notes.txt writing/
Let's create a new directory called thesis using the command mkdir thesis (which has no output):
$ mkdir thesis
As you might (or might not) guess from its name, mkdir means "make directory". Since thesis is a relative path (i.e., doesn't have a leading slash), the new directory is created in the current working directory:
$ ls -F
creatures/ north-pacific-gyre/ thesis/
data/ notes.txt writing/
Desktop/ pizza.cfg
molecules/ solar.pdf
However, there's nothing in it yet:
$ ls -F thesis
One of the simplest ways to create an empty file is via the touch command. Change the working directory to thesis using cd, then touch an empty file called draft.txt:
$ cd thesis
$ touch draft.txt
If we check the directory contents now,
$ ls -F .
draft.txt
Let's tidy up by running rm draft.txt:
$ rm draft.txt
This command removes files ("rm" is short for "remove"). If we run ls again, its output is empty once more, which tells us that our file is gone:
$ ls
The Unix shell doesn't have a trash bin that we can recover deleted files from (though most graphical interfaces to Unix do). Instead, when we delete files, they are unhooked from the file system so that their storage space on disk can be recycled. Tools for finding and recovering deleted files do exist, but there's no guarantee they'll work in any particular situation, since the computer may recycle the file's disk space right away.
Let's re-create that file and then move up one directory to /users/nelle using cd ..:
$ pwd
/users/nelle/thesis
$ touch draft.txt
$ ls
draft.txt
$ cd ..
If we try to remove the entire thesis directory using rm thesis, we get an error message:
$ rm thesis
rm: cannot remove `thesis': Is a directory
This happens because rm only works on files, not directories. The right command is rmdir, which is short for "remove directory". It doesn't work yet either, though, because the directory we're trying to remove isn't empty:
$ rmdir thesis
rmdir: failed to remove `thesis': Directory not empty
This little safety feature can save you a lot of grief, particularly if you are a bad typist. To really get rid of thesis we must first delete the file draft.txt:
$ rm thesis/draft.txt
The directory is now empty, so rmdir can delete it:
$ rmdir thesis
Removing the files in a directory just so that we can remove the directory quickly becomes tedious. Instead, we can use rm with the -r flag (which stands for "recursive"):
$ rm -r thesis
This removes everything in the directory, then the directory itself. If the directory contains sub-directories, rm -r does the same thing to them, and so on. It's very handy, but can do a lot of damage if used without care.
Let's create that directory and file one more time. (Note that this time we're running touch with the path thesis/draft.txt, rather than going into the thesis directory and running nano on draft.txt there.)
$ pwd
/users/nelle
$ mkdir thesis
$ touch thesis/draft.txt
$ ls thesis
draft.txt
draft.txt isn't a particularly informative name, so let's change the file's name using mv, which is short for "move":
$ mv thesis/draft.txt thesis/quotes.txt
The first parameter tells mv what we're "moving", while the second is where it's to go. In this case, we're moving thesis/draft.txt to thesis/quotes.txt, which has the same effect as renaming the file. Sure enough, ls shows us that thesis now contains one file called quotes.txt:
$ ls thesis
quotes.txt
Just for the sake of inconsistency, mv also works on directories --- there is no separate mvdir command.
Let's move quotes.txt into the current working directory. We use mv once again, but this time we'll just use the name of a directory as the second parameter to tell mv that we want to keep the filename, but put the file somewhere new. (This is why the command is called "move".) In this case, the directory name we use is the special directory name . that we mentioned earlier.
$ mv thesis/quotes.txt .
The effect is to move the file from the directory it was in to the current working directory. ls now shows us that thesis is empty:
$ ls thesis
Further, ls with a filename or directory name as a parameter only lists that file or directory. We can use this to see that quotes.txt is still in our current directory:
$ ls quotes.txt
quotes.txt
The cp command works very much like mv, except it copies a file instead of moving it. We can check that it did the right thing using ls with two paths as parameters --- like most Unix commands, ls can be given thousands of paths at once:
$ cp quotes.txt thesis/quotations.txt
$ ls quotes.txt thesis/quotations.txt
quotes.txt thesis/quotations.txt
To prove that we made a copy, let's delete the quotes.txt file in the current directory and then run that same ls again.
$ rm quotes.txt
$ ls quotes.txt thesis/quotations.txt
ls: cannot access quotes.txt: No such file or directory
thesis/quotations.txt
This time it tells us that it can't find quotes.txt in the current directory, but it does find the copy in thesis that we didn't delete.
The shell interprets the character ~ (tilde) at the start of a path to mean "the current user's home directory". For example, if Nelle's home directory is /home/nelle, then ~/data is equivalent to /home/nelle/data. This only works if it is the first character in the path: here/there/~/elsewhere is not /home/nelle/elsewhere.
Suppose that you created a .txt file in your current directory to contain a list of the statistical tests you will need to do to analyze your data, and named it: statstics.txt
After creating and saving this file you realize you misspelled the filename! You want to correct the mistake, which of the following commands could you use to do so?
cp statstics.txt statistics.txtmv statstics.txt statistics.txtmv statstics.txt .cp statstics.txt .What is the output of the closing ls command in the sequence shown below?
$ pwd
/home/jamie/data
$ ls
proteins.dat
$ mkdir recombine
$ mv proteins.dat recombine
$ cp recombine/proteins.dat ../proteins-saved.dat
$ ls
proteins-saved.dat recombinerecombineproteins.dat recombineproteins-saved.datSuppose that:
$ ls -F
analyzed/ fructose.dat raw/ sucrose.dat
What command(s) could you run so that the commands below will produce the output shown?
$ ls
analyzed/ raw/
$ ls analyzed
fructose.dat sucrose.dat
What does cp do when given several filenames and a directory name, as in:
$ mkdir backup
$ cp thesis/citations.txt thesis/quotations.txt backup
What does cp do when given three or more filenames, as in:
$ ls -F
intro.txt methods.txt survey.txt
$ cp intro.txt methods.txt survey.txt
The command ls -R lists the contents of directories recursively, i.e., lists their sub-directories, sub-sub-directories, and so on in alphabetical order at each level. The command ls -t lists things by time of last change, with most recently changed files or directories first. In what order does ls -R -t display things?