Can be run from ` /n/app/bcbio/dev/anaconda/bin/aws or from /usr/bin/aws` on the O2 transfer nodes.

Setup S3 bucket

Setup your S3 bucket with: foo/aws configure You will need your

• AWS Access Key ID
• AWS Secret Access Key
• Default region name
• Default output format

Interact with AWS bucket

• no dirs in AWS, those strings are just prefixes
• use --dryrun to test a command

Problem	Unix rationale	AWS spell
copy files	cp * destination_dir	aws s3 sync . s3://bucket/dir/
get file sizes	ls -lh	aws s3 ls --human-readable s3://bucket/dir/
copy bam files	cp */*.bam /target_dir	options order matters! aws s3 sync s3://bucket/dir/ . --exclude "*" --include "*.bam"